PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.75FRQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 457aa    MW: 51413.8 Da    PI: 8.2322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.75FRQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-0598120123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Aradu.75FRQ  98 FVCEICNKGFQRDQNLQLHRRGH 120
                  89*******************88 PP

2zf-C2H210.70.0017175197123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Aradu.75FRQ 175 WKCDKCSKKYAVHSDWKAHAKIC 197
                  58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.3E-797120No hitNo description
Gene3DG3DSA:3.30.160.601.5E-597120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.1E-598120IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01798120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94998120IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SMARTSM00355140140170IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4163196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.3E-7170195No hitNo description
SMARTSM00355150175195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MMSEEPFSSV LPPNTTITST LVHLQDPTSN PSSNNSKPNS NQPTKKRRNL PGTPGKYQLY  60
TKLTANSNLS VGYICFDSDP DAEVIAMSPK SLMATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRN KEEQVRKKVY VCPEKSCVHH DPCRALGDLT GIKKHYSRKH GEKKWKCDKC  180
SKKYAVHSDW KAHAKICGTR EYKCDCGTIF SRKDSFITHR AFCDALAEEG ARINSVPTTL  240
SNLMDQKLMM MRNNNIQIPL WLDQGNSNNN HNHVSGISSN TSSACTNGNT IIMPHHDVVN  300
NSMFGSQQWQ QNLEASSSSL TNNNNNANVA MMMPPPHAGL KQEQDEMFYF GASNYHHHHI  360
MLQKASQIGG GDELVNLEGS ISSIPPLILN PTRRPSKNDN KDEDDELGLT RDFLGVGEDE  420
STMSNTRPLM LQQHLADFTA MDMHHQTHYS SSSGHYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126137KQRNKEEQVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952372.10.0PREDICTED: protein indeterminate-domain 9-like
SwissprotQ944L31e-105IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLK7LTF81e-125K7LTF8_SOYBN; Uncharacterized protein
STRINGGLYMA12G07510.21e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-93C2H2-like zinc finger protein